1 Bio
I am a dedicated researcher and Bioinformatics Master’s student at Gebze Technical University, with a strong background in Bioengineering. My work focuses on the intersection of biological systems and computational tools, particularly in structural bioinformatics, molecular simulations, and protein-ligand interactions.
Currently, I serve as the President for ISCB-SC RSG-Turkey, where I contribute to the growth and organization of the computational biology community in Turkey.
2 Education
- M.Sc. in Bioinformatics and Systems Biology | Gebze Technical University | 2025 – Present
- B.Sc. in Bioengineering | Gebze Technical University | 2019 – 2025
3 Research & Projects
I have actively contributed to several national research initiatives supported by TÜBİTAK:
- TÜBİTAK 2209-A: Developing a web-based tool for screening small binding pockets in protein ensembles and conducting ensemble docking simulations.
- TÜBİTAK 3501: Investigating H2 production mechanisms of water reduction catalysts using Ab-Initio Molecular Dynamics (AIMD), Density Functional Theory (DFT), and Free Energy Perturbation theory.
- Bioinformatics Tool Development: Experienced in scraping database data to generate paired protein-ligand lists and developing front-end components for bioinformatics applications.
4 Technical Skills
- Simulations & Modeling: GROMACS, AutoDock Vina, Smina, PyMOL, VMD.
- Programming: Python (Intermediate), Bash/Shell scripting, and Web Development (HTML/CSS/JS).
- Dry Lab: RASPA Molecular Simulations, Monte Carlo simulations, and Molecular Docking.
- Other Tools: CAD Software (SolidWorks, AutoCAD, Fusion360), Adobe Photoshop, and Linux System Administration.
Beyond the laboratory, I am an enthusiast of the “Maker” culture. I have previously served as an instructor for middle school students, teaching CAD sketching and 3D modeling for DIY projects.